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Rqc

This is the development version of Rqc; for the stable release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data


Bioconductor version: Development (3.19)

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rqc")
Using Rqc HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, QualityControl, Sequencing, Software
Version 1.37.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 2)
Depends BiocParallel, ShortRead, ggplot2
Imports BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles
System Requirements
URL https://github.com/labbcb/Rqc
Bug Reports https://github.com/labbcb/Rqc/issues
See More
Suggests rmarkdown, testthat
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rqc_1.37.0.tar.gz
Windows Binary Rqc_1.37.0.zip
macOS Binary (x86_64) Rqc_1.37.0.tgz
macOS Binary (arm64) Rqc_1.37.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rqc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rqc
Bioc Package Browser https://code.bioconductor.org/browse/Rqc/
Package Short Url https://bioconductor.org/packages/Rqc/
Package Downloads Report Download Stats