SC3

This is the development version of SC3; for the stable release version, see SC3.

Single-Cell Consensus Clustering

Bioconductor version: Development (3.19)

A tool for unsupervised clustering and analysis of single cell RNA-Seq data.

Author:

Maintainer: ERROR

Citation (from within R, enter citation("SC3")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SC3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, Clustering, DataRepresentation, DifferentialExpression, DimensionReduction, GUI, ImmunoOncology, RNASeq, SingleCell, Software, SupportVectorMachine, Transcription, Transcriptomics, Visualization
Version	1.31.0
In Bioconductor since	BioC 3.3 (R-3.3) (8 years)
License	GPL-3
Depends	R (>= 3.3)
Imports	graphics, stats, utils, methods, e1071, parallel, foreach, doParallel, doRNG, shiny, ggplot2, pheatmap (>= 1.0.8), ROCR, robustbase, rrcov, cluster, WriteXLS, Rcpp (>= 0.11.1), SummarizedExperiment, SingleCellExperiment, BiocGenerics, S4Vectors
System Requirements
URL	https://github.com/hemberg-lab/SC3
Bug Reports	https://support.bioconductor.org/t/sc3/

Suggests	knitr, rmarkdown, mclust, scater, BiocStyle
Linking To	Rcpp, RcppArmadillo
Enhances
Depends On Me
Imports Me	FEAST
Suggests Me	InteractiveComplexHeatmap, scTreeViz, VAExprs
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SC3
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SC3
Package Short Url	https://bioconductor.org/packages/SC3/
Package Downloads Report	Download Stats