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SMAD

This is the development version of SMAD; for the stable release version, see SMAD.

Statistical Modelling of AP-MS Data (SMAD)


Bioconductor version: Development (3.19)

Assigning probability scores to protein interactions captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.

Author: Qingzhou Zhang [aut, cre]

Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>

Citation (from within R, enter citation("SMAD")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SMAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAD")
SMAD Quick Start HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License MIT + file LICENSE
Depends R (>= 3.6.0), RcppAlgos
Imports magrittr (>= 1.5), dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0)
System Requirements
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Suggests knitr, rmarkdown, testthat, BiocStyle
Linking To Rcpp
Enhances
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Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SMAD_1.19.0.tar.gz
Windows Binary SMAD_1.19.0.zip
macOS Binary (x86_64) SMAD_1.19.0.tgz
macOS Binary (arm64) SMAD_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SMAD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SMAD
Bioc Package Browser https://code.bioconductor.org/browse/SMAD/
Package Short Url https://bioconductor.org/packages/SMAD/
Package Downloads Report Download Stats