DOI: 10.18129/B9.bioc.TENxIO  

This is the development version of TENxIO; for the stable release version, see TENxIO.

Import methods for 10X Genomics files

Bioconductor version: Development (3.19)

Provides a structured S4 approach to importing data files from the 10X pipelines. It mainly supports Single Cell Multiome ATAC + Gene Expression data among other data types. The main Bioconductor data representations used are SingleCellExperiment and RaggedExperiment.

Author: Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("TENxIO")):


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biocViews DataImport, Infrastructure, SingleCell, Software
Version 1.5.3
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License Artistic-2.0
Depends R (>= 4.2.0), SingleCellExperiment, SummarizedExperiment
Imports BiocBaseUtils, BiocGenerics, BiocIO, GenomeInfoDb, GenomicRanges, Matrix, MatrixGenerics, methods, RCurl, readr, R.utils, S4Vectors, utils
Suggests BiocStyle, DropletTestFiles, ExperimentHub, HDF5Array, knitr, RaggedExperiment, rhdf5, rmarkdown, Rsamtools, tinytest
URL https://github.com/waldronlab/TENxIO
BugReports https://github.com/waldronlab/TENxIO/issues
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Source Package TENxIO_1.5.3.tar.gz
Windows Binary TENxIO_1.5.3.zip (64-bit only)
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macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TENxIO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxIO
Bioc Package Browser https://code.bioconductor.org/browse/TENxIO/
Package Short Url https://bioconductor.org/packages/TENxIO/
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