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This is the development version of TENxIO; for the stable release version, see TENxIO.

Import methods for 10X Genomics files

Bioconductor version: Development (3.20)

Provides a structured S4 approach to importing data files from the 10X pipelines. It mainly supports Single Cell Multiome ATAC + Gene Expression data among other data types. The main Bioconductor data representations used are SingleCellExperiment and RaggedExperiment.

Author: Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at>

Citation (from within R, enter citation("TENxIO")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

TENxIO Quick Start Guide HTML R Script
Reference Manual PDF


biocViews DataImport, Infrastructure, SingleCell, Software
Version 1.7.1
In Bioconductor since BioC 3.16 (R-4.2) (1.5 years)
License Artistic-2.0
Depends R (>= 4.2.0), SingleCellExperiment, SummarizedExperiment
Imports BiocBaseUtils, BiocGenerics, BiocIO, GenomeInfoDb, GenomicRanges, Matrix, MatrixGenerics, methods, RCurl, readr, R.utils, S4Vectors, utils
System Requirements
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Suggests BiocStyle, DropletTestFiles, ExperimentHub, HDF5Array, knitr, RaggedExperiment, rhdf5, rmarkdown, Rsamtools, tinytest
Linking To
Depends On Me VisiumIO
Imports Me
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package TENxIO_1.7.1.tar.gz
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