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Xeva

This is the development version of Xeva; for the stable release version, see Xeva.

Analysis of patient-derived xenograft (PDX) data


Bioconductor version: Development (3.19)

The Xeva package provides efficient and powerful functions for patient-drived xenograft (PDX) based pharmacogenomic data analysis. This package contains a set of functions to perform analysis of patient-derived xenograft data. This package was developed by the BHKLab, for further information please see our documentation.

Author: Arvind Mer [aut], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("Xeva")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Xeva")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Xeva")
The Xeva User's Guide PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, GeneExpression, Pharmacogenetics, Pharmacogenomics, Software
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.6)
Imports methods, stats, utils, BBmisc, Biobase, grDevices, ggplot2, scales, ComplexHeatmap, parallel, doParallel, Rmisc, grid, nlme, PharmacoGx, downloader
System Requirements
URL
Bug Reports https://github.com/bhklab/Xeva/issues
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Xeva_1.19.0.tar.gz
Windows Binary Xeva_1.19.0.zip
macOS Binary (x86_64) Xeva_1.19.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Xeva
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Xeva
Bioc Package Browser https://code.bioconductor.org/browse/Xeva/
Package Short Url https://bioconductor.org/packages/Xeva/
Package Downloads Report Download Stats