alabaster.files

DOI: 10.18129/B9.bioc.alabaster.files  

This is the development version of alabaster.files; for the stable release version, see alabaster.files.

Wrappers to Save Common File Formats

Bioconductor version: Development (3.19)

Save common bioinformatics file formats within the alabaster framework. This includes BAM, BED, VCF, bigWig, bigBed, FASTQ, FASTA and so on. We save and load additional metadata for each file, and we support linkage between each file and its corresponding index.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("alabaster.files")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.files")

 

HTML	R Script	Saving common file formats
PDF		Reference Manual
Text		LICENSE

Details

biocViews	DataImport, DataRepresentation, Software
Version	1.1.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	MIT + file LICENSE
Depends	alabaster.base
Imports	methods, S4Vectors, BiocGenerics, rtracklayer, Rsamtools, Biostrings
LinkingTo
Suggests	BiocStyle, rmarkdown, knitr, testthat, VariantAnnotation
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	alabaster.files_1.1.0.tar.gz
Windows Binary	alabaster.files_1.1.0.zip
macOS Binary (x86_64)	alabaster.files_1.1.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/alabaster.files
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/alabaster.files
Bioc Package Browser	https://code.bioconductor.org/browse/alabaster.files/
Package Short Url	https://bioconductor.org/packages/alabaster.files/
Package Downloads Report	Download Stats