alabaster.se
This is the development version of alabaster.se; for the stable release version, see alabaster.se.
Load and Save SummarizedExperiments from File
Bioconductor version: Development (3.19)
Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("alabaster.se")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("alabaster.se")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | DataImport, DataRepresentation, Software |
Version | 1.3.4 |
In Bioconductor since | BioC 3.17 (R-4.3) (1 year) |
License | MIT + file LICENSE |
Depends | SummarizedExperiment, alabaster.base |
Imports | methods, alabaster.ranges, alabaster.matrix, BiocGenerics, S4Vectors, IRanges, GenomicRanges, jsonlite |
System Requirements | |
URL |
See More
Suggests | rmarkdown, knitr, testthat, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | alabaster, alabaster.mae, alabaster.sce, alabaster.vcf, celldex |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/alabaster.se |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.se |
Package Short Url | https://bioconductor.org/packages/alabaster.se/ |
Package Downloads Report | Download Stats |