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biobtreeR

This is the development version of biobtreeR; for the stable release version, see biobtreeR.

Using biobtree tool from R


Bioconductor version: Development (3.19)

The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.

Author: Tamer Gur

Maintainer: Tamer Gur <tgur at ebi.ac.uk>

Citation (from within R, enter citation("biobtreeR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("biobtreeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biobtreeR")
The biobtreeR users guide HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews Annotation, Software
Version 1.15.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License MIT + file LICENSE
Depends
Imports httr, httpuv, stringi, jsonlite, methods, utils
System Requirements
URL https://github.com/tamerh/biobtreeR
Bug Reports https://github.com/tamerh/biobtreeR/issues
See More
Suggests BiocStyle, knitr, testthat, rmarkdown, markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biobtreeR_1.15.0.tar.gz
Windows Binary biobtreeR_1.15.0.zip
macOS Binary (x86_64) biobtreeR_1.15.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/biobtreeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biobtreeR
Bioc Package Browser https://code.bioconductor.org/browse/biobtreeR/
Package Short Url https://bioconductor.org/packages/biobtreeR/
Package Downloads Report Download Stats