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biodbNcbi

This is the development version of biodbNcbi; for the stable release version, see biodbNcbi.

biodbNcbi, a library for connecting to NCBI Databases.


Bioconductor version: Development (3.19)

The biodbNcbi library provides access to the NCBI databases CCDS, Gene, Pubchem Comp and Pubchem Subst, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name or mass.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbNcbi")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("biodbNcbi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbNcbi")
Introduction to the biodbNcbi package. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.7.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License AGPL-3
Depends R (>= 4.1)
Imports biodb(>= 1.3.2), R6, XML, chk
System Requirements
URL https://github.com/pkrog/biodbNcbi
Bug Reports https://github.com/pkrog/biodbNCbi/issues
See More
Suggests roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbNcbi_1.7.0.tar.gz
Windows Binary biodbNcbi_1.7.0.zip
macOS Binary (x86_64) biodbNcbi_1.7.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/biodbNcbi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbNcbi
Bioc Package Browser https://code.bioconductor.org/browse/biodbNcbi/
Package Short Url https://bioconductor.org/packages/biodbNcbi/
Package Downloads Report Download Stats