bluster

DOI: 10.18129/B9.bioc.bluster    

This is the development version of bluster; for the stable release version, see bluster.

Clustering Algorithms for Bioconductor

Bioconductor version: Development (3.13)

Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.

Author: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Maintainer: <>

Citation (from within R, enter citation("bluster")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bluster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics
Version 1.1.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends
Imports stats, methods, utils, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors
LinkingTo Rcpp
Suggests knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me mbkmeans, scDblFinder, scran
Suggests Me batchelor, scDblFinder
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/bluster
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bluster
Package Short Url https://bioconductor.org/packages/bluster/
Package Downloads Report Download Stats

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