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cellxgenedp

This is the development version of cellxgenedp; for the stable release version, see cellxgenedp.

Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal


Bioconductor version: Development (3.19)

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("cellxgenedp")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cellxgenedp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellxgenedp")
Case studies HTML R Script
Discovery and retrieval HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, SingleCell, Software, ThirdPartyClient
Version 1.7.2
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License Artistic-2.0
Depends dplyr
Imports httr, curl, jsonlite, utils, tools, shiny, DT, rjsoncons
System Requirements
URL https://mtmorgan.github.io/cellxgenedp/ https://github.com/mtmorgan/cellxgenedp
Bug Reports https://github.com/mtmorgan/cellxgenedp/issues
See More
Suggests zellkonverter, SingleCellExperiment, HDF5Array, tidyr, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellxgenedp_1.7.2.tar.gz
Windows Binary cellxgenedp_1.7.2.zip
macOS Binary (x86_64) cellxgenedp_1.7.2.tgz
macOS Binary (arm64) cellxgenedp_1.7.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellxgenedp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellxgenedp
Bioc Package Browser https://code.bioconductor.org/browse/cellxgenedp/
Package Short Url https://bioconductor.org/packages/cellxgenedp/
Package Downloads Report Download Stats