cellxgenedp

DOI: 10.18129/B9.bioc.cellxgenedp    

This is the development version of cellxgenedp; for the stable release version, see cellxgenedp.

Discover and Access Single Cell Data Sets in the cellxgene Data Portal

Bioconductor version: Development (3.16)

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut], Daniel Parker [cph] (jsoncons C++ library creator)

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("cellxgenedp")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cellxgenedp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, SingleCell, Software, ThirdPartyClient
Version 1.1.1
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License Artistic-2.0 | BSL-1.0 | file LICENSE
Depends
Imports dplyr, httr, curl, jsonlite, utils, tools, parallel, shiny, DT
LinkingTo cpp11
Suggests zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
SystemRequirements C++14
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary cellxgenedp_1.1.1.zip
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/cellxgenedp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellxgenedp
Package Short Url https://bioconductor.org/packages/cellxgenedp/
Package Downloads Report Download Stats

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