cghMCR

DOI: 10.18129/B9.bioc.cghMCR  

This is the development version of cghMCR; for the stable release version, see cghMCR.

Find chromosome regions showing common gains/losses

Bioconductor version: Development (3.19)

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cghMCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

 

PDF	R Script	cghMCR findMCR
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.61.0
In Bioconductor since	BioC 1.8 (R-2.3) (17.5 years)
License	LGPL
Depends	methods, DNAcopy, CNTools, limma
Imports	BiocGenerics(>= 0.1.6), stats4
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cghMCR_1.61.0.tar.gz
Windows Binary	cghMCR_1.61.0.zip
macOS Binary (x86_64)	cghMCR_1.61.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/cghMCR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cghMCR
Bioc Package Browser	https://code.bioconductor.org/browse/cghMCR/
Package Short Url	https://bioconductor.org/packages/cghMCR/
Package Downloads Report	Download Stats