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This is the development version of csdR; for the stable release version, see csdR.

Differential gene co-expression

Bioconductor version: Development (3.19)

This package contains functionality to run differential gene co-expression across two different conditions. The algorithm is inspired by Voigt et al. 2017 and finds Conserved, Specific and Differentiated genes (hence the name CSD). This package include efficient and variance calculation by bootstrapping and Welford's algorithm.

Author: Jakob Peder Pettersen [aut, cre]

Maintainer: Jakob Peder Pettersen <jakobpeder.pettersen at gmail.com>

Citation (from within R, enter citation("csdR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

csdR HTML R Script
Reference Manual PDF


biocViews DifferentialExpression, GeneExpression, GraphAndNetwork, Network, Software
Version 1.9.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License GPL-3
Depends R (>= 4.1.0)
Imports WGCNA, glue, RhpcBLASctl, matrixStats, Rcpp
System Requirements
URL https://almaaslab.github.io/csdR https://github.com/AlmaasLab/csdR
Bug Reports https://github.com/AlmaasLab/csdR/issues
See More
Suggests rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, magrittr, igraph, dplyr
Linking To Rcpp
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package csdR_1.9.0.tar.gz
Windows Binary csdR_1.9.0.zip
macOS Binary (x86_64) csdR_1.9.0.tgz
macOS Binary (arm64) csdR_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/csdR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/csdR
Bioc Package Browser https://code.bioconductor.org/browse/csdR/
Package Short Url https://bioconductor.org/packages/csdR/
Package Downloads Report Download Stats