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This is the development version of customCMPdb; for the stable release version, see customCMPdb.

Customize and Query Compound Annotation Database

Bioconductor version: Development (3.19)

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

customCMPdb HTML R Script
Reference Manual PDF


biocViews AnnotationHubSoftware, Cheminformatics, Software
Version 1.13.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache
System Requirements
URL https://github.com/yduan004/customCMPdb/
Bug Reports https://github.com/yduan004/customCMPdb/issues
See More
Suggests knitr, rmarkdown, testthat, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package customCMPdb_1.13.0.tar.gz
Windows Binary customCMPdb_1.13.0.zip
macOS Binary (x86_64) customCMPdb_1.13.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/customCMPdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/customCMPdb
Bioc Package Browser https://code.bioconductor.org/browse/customCMPdb/
Package Short Url https://bioconductor.org/packages/customCMPdb/
Package Downloads Report Download Stats