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dStruct

This is the development version of dStruct; for the stable release version, see dStruct.

Identifying differentially reactive regions from RNA structurome profiling data


Bioconductor version: Development (3.19)

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.

Author: Krishna Choudhary [aut, cre] , Sharon Aviran [aut]

Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>

Citation (from within R, enter citation("dStruct")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("dStruct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dStruct")
Differential RNA structurome analysis using `dStruct` HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Sequencing, Software, StatisticalMethod, StructuralPrediction
Version 1.9.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License GPL (>= 2)
Depends R (>= 4.1)
Imports zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils
System Requirements
URL https://github.com/dataMaster-Kris/dStruct
Bug Reports https://github.com/dataMaster-Kris/dStruct/issues
See More
Suggests BiocStyle, knitr, rmarkdown, tidyverse, testthat (>= 3.0.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dStruct_1.9.0.tar.gz
Windows Binary dStruct_1.9.0.zip (64-bit only)
macOS Binary (x86_64) dStruct_1.9.0.tgz
macOS Binary (arm64) dStruct_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/dStruct
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dStruct
Bioc Package Browser https://code.bioconductor.org/browse/dStruct/
Package Short Url https://bioconductor.org/packages/dStruct/
Package Downloads Report Download Stats