divergence

DOI: 10.18129/B9.bioc.divergence    

This is the development version of divergence; for the stable release version, see divergence.

Divergence: Functionality for assessing omics data by divergence with respect to a baseline

Bioconductor version: Development (3.11)

This package provides functionality for performing divergence analysis as presented in Dinalankara et al, "Digitizing omics profiles by divergence from a baseline", PANS 2018. This allows the user to simplify high dimensional omics data into a binary or ternary format which encapsulates how the data is divergent from a specified baseline group with the same univariate or multivariate features.

Author: Wikum Dinalankara <wdinala1 at jhmi.edu>, Luigi Marchionni <marchion at jhu.edu>, Qian Ke <qke1 at jhu.edu>

Maintainer: Wikum Dinalankara <wdinala1 at jhmi.edu>, Luigi Marchionni <marchion at jhu.edu>

Citation (from within R, enter citation("divergence")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("divergence")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("divergence")

 

HTML R Script Performing Divergence Analysis
PDF   Reference Manual
Text   LICENSE

Details

biocViews Software, StatisticalMethod
Version 1.3.0
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License GPL-2
Depends R (>= 3.6), SummarizedExperiment
Imports
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package divergence_1.3.0.tar.gz
Windows Binary divergence_1.3.0.zip
Mac OS X 10.11 (El Capitan) divergence_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/divergence
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/divergence
Package Short Url https://bioconductor.org/packages/divergence/
Package Downloads Report Download Stats

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