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drawProteins

This is the development version of drawProteins; for the stable release version, see drawProteins.

Package to Draw Protein Schematics from Uniprot API output


Bioconductor version: Development (3.19)

This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.

Author: Paul Brennan [aut, cre]

Maintainer: Paul Brennan <brennanpincardiff at gmail.com>

Citation (from within R, enter citation("drawProteins")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("drawProteins")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drawProteins")
Using drawProteins HTML R Script
Using extract_transcripts in drawProteins HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews FunctionalPrediction, Proteomics, Software, Visualization
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports ggplot2, httr, dplyr, readr, tidyr
System Requirements
URL https://github.com/brennanpincardiff/drawProteins
Bug Reports https://github.com/brennanpincardiff/drawProteins/issues/new
See More
Suggests covr, testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me factR
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package drawProteins_1.23.0.tar.gz
Windows Binary drawProteins_1.23.0.zip
macOS Binary (x86_64) drawProteins_1.23.0.tgz
macOS Binary (arm64) drawProteins_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/drawProteins
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/drawProteins
Bioc Package Browser https://code.bioconductor.org/browse/drawProteins/
Package Short Url https://bioconductor.org/packages/drawProteins/
Package Downloads Report Download Stats