Welcome to the new bioconductor.org!

dupRadar

This is the development version of dupRadar; for the stable release version, see dupRadar.

Assessment of duplication rates in RNA-Seq datasets


Bioconductor version: Development (3.19)

Duplication rate quality control for RNA-Seq datasets.

Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Citation (from within R, enter citation("dupRadar")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("dupRadar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dupRadar")
Using dupRadar HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Technology
Version 1.33.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-3
Depends R (>= 3.2.0)
Imports Rsubread(>= 1.14.1), KernSmooth
System Requirements
URL https://www.bioconductor.org/packages/dupRadar https://ssayols.github.io/dupRadar/index.html
See More
Suggests BiocStyle, knitr, rmarkdown, AnnotationHub
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dupRadar_1.33.0.tar.gz
Windows Binary
macOS Binary (x86_64) dupRadar_1.33.0.tgz
macOS Binary (arm64) dupRadar_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/dupRadar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dupRadar
Bioc Package Browser https://code.bioconductor.org/browse/dupRadar/
Package Short Url https://bioconductor.org/packages/dupRadar/
Package Downloads Report Download Stats