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funtooNorm

This is the development version of funtooNorm; for the stable release version, see funtooNorm.

Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit


Bioconductor version: Development (3.19)

Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.

Author: Celia Greenwood <celia.greenwood at mcgill.ca>,Stepan Grinek <stepan.grinek at ladydavis.ca>, Maxime Turgeon <maxime.turgeon at mail.mcgill.ca>, Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Maintainer: Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Citation (from within R, enter citation("funtooNorm")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("funtooNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, Normalization, Preprocessing, Software
Version 1.27.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL-3
Depends R (>= 3.4)
Imports pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats
System Requirements
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Suggests prettydoc, minfiData, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package funtooNorm_1.27.0.tar.gz
Windows Binary funtooNorm_1.27.0.zip
macOS Binary (x86_64) funtooNorm_1.27.0.tgz
macOS Binary (arm64) funtooNorm_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/funtooNorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/funtooNorm
Bioc Package Browser https://code.bioconductor.org/browse/funtooNorm/
Package Short Url https://bioconductor.org/packages/funtooNorm/
Package Downloads Report Download Stats