Welcome to the new bioconductor.org!

gDRcore

This is the development version of gDRcore; for the stable release version, see gDRcore.

Processing functions and interface to process and analyze drug dose-response data


Bioconductor version: Development (3.19)

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRcore")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDRcore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRcore")
gDRcore HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ShinyApps, Software
Version 1.1.2
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports BumpyMatrix, BiocParallel, checkmate, futile.logger, gDRutils(>= 0.99.34), MultiAssayExperiment, purrr, stringr, S4Vectors, SummarizedExperiment, data.table
System Requirements
URL
See More
Suggests BiocStyle, gDRstyle(>= 0.99.15), gDRimport(>= 0.99.26), gDRtestData(>= 0.99.20), IRanges, knitr, pkgbuild, qs, testthat, yaml
Linking To
Enhances
Depends On Me gDR
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gDRcore_1.1.2.tar.gz
Windows Binary gDRcore_1.1.2.zip
macOS Binary (x86_64) gDRcore_1.1.2.tgz
macOS Binary (arm64) gDRcore_1.1.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/gDRcore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gDRcore
Bioc Package Browser https://code.bioconductor.org/browse/gDRcore/
Package Short Url https://bioconductor.org/packages/gDRcore/
Package Downloads Report Download Stats