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This is the development version of iSEEfier; for the stable release version, see iSEEfier.

Streamlining the creation of initial states for starting an iSEE instance

Bioconductor version: Development (3.20)

iSEEfier provides a set of functionality to quickly and intuitively create, inspect, and combine initial configuration objects. These can be conveniently passed in a straightforward manner to the function call to launch iSEE() with the specified configuration. This package currently works seamlessly with the sets of panels provided by the iSEE and iSEEu packages, but can be extended to accommodate the usage of any custom panel (e.g. from iSEEde, iSEEpathways, or any panel developed independently by the user).

Author: Najla Abassi [aut, cre] , Federico Marini [aut]

Maintainer: Najla Abassi <abassi.nejla96 at>

Citation (from within R, enter citation("iSEEfier")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

iSEEfier_userguide HTML R Script
Reference Manual PDF


biocViews CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, ShinyApps, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version 1.1.0
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License MIT + file LICENSE
Imports iSEE, iSEEu, methods, ggplot2, igraph, rlang, stats, SummarizedExperiment, SingleCellExperiment, visNetwork, BiocBaseUtils
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Suggests knitr, rmarkdown, scater, scRNAseq,, scuttle, BiocStyle, testthat (>= 3.0.0)
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Follow Installation instructions to use this package in your R session.

Source Package iSEEfier_1.1.0.tar.gz
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macOS Binary (x86_64) iSEEfier_1.1.0.tgz
macOS Binary (arm64) iSEEfier_1.1.0.tgz
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Source Repository (Developer Access) git clone
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