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This is the development version of kissDE; for the stable release version, see kissDE.

Retrieves Condition-Specific Variants in RNA-Seq Data

Bioconductor version: Development (3.19)

Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.

Author: Clara Benoit-Pilven [aut], Camille Marchet [aut], Janice Kielbassa [aut], Lilia Brinza [aut], Audric Cologne [aut], Aurélie Siberchicot [aut, cre], Vincent Lacroix [aut], Frank Picard [ctb], Laurent Jacob [ctb], Vincent Miele [ctb]

Maintainer: Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>

Citation (from within R, enter citation("kissDE")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

kissDE.pdf PDF R Script
Reference Manual PDF


biocViews AlternativeSplicing, DifferentialSplicing, ExperimentalDesign, GenomicVariation, RNASeq, Software, Transcriptomics
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL (>= 2)
Imports aods3, Biobase, DESeq2, DSS, ggplot2, gplots, graphics, grDevices, matrixStats, stats, utils, foreach, doParallel, parallel, shiny, shinycssloaders, ade4, factoextra, DT
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Follow Installation instructions to use this package in your R session.

Source Package kissDE_1.23.0.tar.gz
Windows Binary kissDE_1.23.0.zip
macOS Binary (x86_64) kissDE_1.23.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/kissDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/kissDE
Bioc Package Browser https://code.bioconductor.org/browse/kissDE/
Package Short Url https://bioconductor.org/packages/kissDE/
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