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This is the development version of loci2path; for the stable release version, see loci2path.

Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

Bioconductor version: Development (3.19)

loci2path performs statistics-rigorous enrichment analysis of eQTLs in genomic regions of interest. Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) project and pathway collections from MSigDB.

Author: Tianlei Xu

Maintainer: Tianlei Xu <tianlei.xu at emory.edu>

Citation (from within R, enter citation("loci2path")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

loci2path HTML R Script
Reference Manual PDF


biocViews BioCarta, Coverage, FunctionalGenomics, GeneExpression, GeneSetEnrichment, Genetics, Sequencing, Software
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports pheatmap, wordcloud, RColorBrewer, data.table, methods, grDevices, stats, graphics, GenomicRanges, BiocParallel, S4Vectors
System Requirements
URL https://github.com/StanleyXu/loci2path
Bug Reports https://github.com/StanleyXu/loci2path/issues
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Follow Installation instructions to use this package in your R session.

Source Package loci2path_1.23.0.tar.gz
Windows Binary loci2path_1.23.0.zip
macOS Binary (x86_64) loci2path_1.23.0.tgz
macOS Binary (arm64) loci2path_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/loci2path
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/loci2path
Bioc Package Browser https://code.bioconductor.org/browse/loci2path/
Package Short Url https://bioconductor.org/packages/loci2path/
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