mBPCR

DOI: 10.18129/B9.bioc.mBPCR    

This is the development version of mBPCR; for the stable release version, see mBPCR.

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: Development (3.11)

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mBPCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")

 

PDF R Script mBPCR
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, SNP, Software, aCGH
Version 1.41.1
In Bioconductor since BioC 2.5 (R-2.10) (10.5 years)
License GPL (>= 2)
Depends oligoClasses, GWASTools
Imports Biobase, graphics, methods, utils, grDevices
LinkingTo
Suggests xtable
SystemRequirements
Enhances
URL http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mBPCR_1.41.1.tar.gz
Windows Binary mBPCR_1.41.1.zip
Mac OS X 10.11 (El Capitan) mBPCR_1.41.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/mBPCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mBPCR
Package Short Url https://bioconductor.org/packages/mBPCR/
Package Downloads Report Download Stats

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