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This is the development version of magpie; for the stable release version, see magpie.

MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation

Bioconductor version: Development (3.20)

This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC, power, and precision under various study design parameters, including but not limited to sample size, sequencing depth, and testing method. It can also output results into .xlsx files or produce corresponding figures of choice.

Author: Daoyu Duan [aut, cre], Zhenxing Guo [aut]

Maintainer: Daoyu Duan <dxd429 at>

Citation (from within R, enter citation("magpie")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

magpie Package User's Guide HTML R Script
Reference Manual PDF


biocViews DifferentialMethylation, Epitranscriptomics, RNASeq, Sequencing, Software
Version 1.5.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License MIT + file LICENSE
Depends R (>= 4.3.0)
Imports utils, rtracklayer, Matrix, matrixStats, stats, S4Vectors, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi, aod, BiocParallel, DESeq2, openxlsx, RColorBrewer, reshape2, TRESS
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Suggests knitr, rmarkdown, kableExtra, RUnit, TBX20BamSubset, BiocGenerics, BiocStyle
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Follow Installation instructions to use this package in your R session.

Source Package magpie_1.5.0.tar.gz
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macOS Binary (x86_64) magpie_1.5.0.tgz
macOS Binary (arm64) magpie_1.5.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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