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marray

This is the development version of marray; for the stable release version, see marray.

Exploratory analysis for two-color spotted microarray data


Bioconductor version: Development (3.19)

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Citation (from within R, enter citation("marray")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("marray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("marray")
marray Normalization PDF R Script
marray Overview PDF R Script
marrayClasses Overview PDF R Script
marrayClasses Tutorial (short) PDF R Script
marrayInput Introduction PDF R Script
marrayPlots Overview PDF R Script
Reference Manual PDF
LICENSE Text

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 1.81.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License LGPL
Depends R (>= 2.10.0), limma, methods
Imports
System Requirements
URL http://www.maths.usyd.edu.au/u/jeany/
See More
Suggests tkWidgets
Linking To
Enhances
Depends On Me beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, MineICA, nnNorm, OLIN, RBM, stepNorm, TurboNorm
Imports Me arrayQuality, ChAMP, methylPipe, MSstats, MSstatsShiny, nnNorm, OLIN, OLINgui, piano, stepNorm, timecourse
Suggests Me AgiMicroRna, DEGraph, Mfuzz
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package marray_1.81.0.tar.gz
Windows Binary marray_1.81.0.zip
macOS Binary (x86_64) marray_1.81.0.tgz
macOS Binary (arm64) marray_1.81.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/marray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/marray
Bioc Package Browser https://code.bioconductor.org/browse/marray/
Package Short Url https://bioconductor.org/packages/marray/
Package Downloads Report Download Stats