matter

DOI: 10.18129/B9.bioc.matter  

This is the development version of matter; for the stable release version, see matter.

Out-of-memory dense and sparse signal arrays

Bioconductor version: Development (3.19)

Memory-efficient file-based data structures for dense and sparse vectors, matrices, arrays, and lists with applications to nonuniformly sampled signals and spectra.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")

 

HTML	R Script	1. Matter 2: User guide for flexible out-of-memory data structures
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software
Version	2.5.0
In Bioconductor since	BioC 3.4 (R-3.3) (7 years)
License	Artistic-2.0
Depends	R (>= 4.0), BiocParallel, Matrix, methods
Imports	BiocGenerics, ProtGenerics, digest, irlba, biglm, stats, stats4, graphics, grDevices, utils
LinkingTo
Suggests	BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL	https://github.com/kuwisdelu/matter
BugReports	https://github.com/kuwisdelu/matter/issues
Depends On Me	CardinalIO
Imports Me	Cardinal
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	matter_2.5.0.tar.gz
Windows Binary	matter_2.5.0.zip
macOS Binary (x86_64)	matter_2.5.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/matter
Bioc Package Browser	https://code.bioconductor.org/browse/matter/
Package Short Url	https://bioconductor.org/packages/matter/
Package Downloads Report	Download Stats