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meshr

This is the development version of meshr; for the stable release version, see meshr.

Tools for conducting enrichment analysis of MeSH


Bioconductor version: Development (3.19)

A set of annotation maps describing the entire MeSH assembled using data from MeSH.

Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("meshr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("meshr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("meshr")
AnnotationHub-style MeSH ORA Framework from BioC 3.14 HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics
Version 2.9.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports markdown, rmarkdown, BiocStyle, knitr, methods, stats, utils, fdrtool, MeSHDbi, Category, S4Vectors, BiocGenerics, RSQLite
System Requirements
URL
Bug Reports https://github.com/rikenbit/meshr/issues
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me scTensor
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package meshr_2.9.0.tar.gz
Windows Binary meshr_2.9.0.zip
macOS Binary (x86_64) meshr_2.9.0.tgz
macOS Binary (arm64) meshr_2.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/meshr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/meshr
Bioc Package Browser https://code.bioconductor.org/browse/meshr/
Package Short Url https://bioconductor.org/packages/meshr/
Package Downloads Report Download Stats