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metaSeq

This is the development version of metaSeq; for the stable release version, see metaSeq.

Meta-analysis of RNA-Seq count data in multiple studies


Bioconductor version: Development (3.19)

The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method

Author: Koki Tsuyuzaki, Itoshi Nikaido

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("metaSeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("metaSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaSeq")
metaSeq PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.43.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 2.13.0), NOISeq, snow, Rcpp
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metaSeq_1.43.0.tar.gz
Windows Binary metaSeq_1.43.0.zip
macOS Binary (x86_64) metaSeq_1.43.0.tgz
macOS Binary (arm64) metaSeq_1.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metaSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metaSeq
Bioc Package Browser https://code.bioconductor.org/browse/metaSeq/
Package Short Url https://bioconductor.org/packages/metaSeq/
Package Downloads Report Download Stats