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metapod

This is the development version of metapod; for the stable release version, see metapod.

Meta-Analyses on P-Values of Differential Analyses


Bioconductor version: Development (3.19)

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("metapod")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("metapod")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metapod")
Meta-analysis strategies HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialPeakCalling, MultipleComparison, Software
Version 1.11.1
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License GPL-3
Depends
Imports Rcpp
System Requirements C++11
URL
See More
Suggests testthat, knitr, BiocStyle, rmarkdown
Linking To Rcpp
Enhances
Depends On Me
Imports Me csaw, mumosa, scran
Suggests Me TSCAN
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metapod_1.11.1.tar.gz
Windows Binary metapod_1.11.1.zip
macOS Binary (x86_64) metapod_1.11.1.tgz
macOS Binary (arm64) metapod_1.11.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/metapod
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metapod
Bioc Package Browser https://code.bioconductor.org/browse/metapod/
Package Short Url https://bioconductor.org/packages/metapod/
Package Downloads Report Download Stats