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mirTarRnaSeq

This is the development version of mirTarRnaSeq; for the stable release version, see mirTarRnaSeq.

mirTarRnaSeq


Bioconductor version: Development (3.19)

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

Author: Mercedeh Movassagh [aut, cre] , Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]

Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>

Citation (from within R, enter citation("mirTarRnaSeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mirTarRnaSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirTarRnaSeq")
mirTarRnaSeq PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA
Version 1.11.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License MIT + file LICENSE
Depends R (>= 4.1.0), ggplot2
Imports purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils, viridis
System Requirements
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Suggests BiocStyle, knitr, rmarkdown, R.cache, SPONGE
Linking To
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mirTarRnaSeq_1.11.0.tar.gz
Windows Binary mirTarRnaSeq_1.11.0.zip
macOS Binary (x86_64) mirTarRnaSeq_1.11.0.tgz
macOS Binary (arm64) mirTarRnaSeq_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mirTarRnaSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mirTarRnaSeq
Bioc Package Browser https://code.bioconductor.org/browse/mirTarRnaSeq/
Package Short Url https://bioconductor.org/packages/mirTarRnaSeq/
Package Downloads Report Download Stats