pRolocGUI

DOI: 10.18129/B9.bioc.pRolocGUI  

This is the development version of pRolocGUI; for the stable release version, see pRolocGUI.

Interactive visualisation of spatial proteomics data

Bioconductor version: Development (3.18)

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

Author: Lisa Breckels [aut, cre] , Thomas Naake [aut], Laurent Gatto [aut]

Maintainer: Lisa Breckels <lms79 at cam.ac.uk>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pRolocGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Video		pRoloc, pRolocdata and pRolocGUI

Details

biocViews	GUI, Proteomics, Software, Visualization
Version	2.11.0
In Bioconductor since	BioC 3.0 (R-3.1) (8.5 years)
License	GPL-2
Depends	methods, R (>= 3.1.0), pRoloc(>= 1.27.6), Biobase, MSnbase(>= 2.1.11)
Imports	shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2, shinydashboardPlus (>= 2.0.0), colourpicker, shinyhelper, shinyWidgets, shinyjs, colorspace, stats, grDevices, grid, BiocGenerics, shinydashboard
LinkingTo
Suggests	pRolocdata, knitr, BiocStyle(>= 2.5.19), rmarkdown, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/lgatto/pRolocGUI
BugReports	https://github.com/lgatto/pRolocGUI/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	pRolocGUI_2.11.0.zip (64-bit only)
macOS Binary (x86_64)	pRolocGUI_2.11.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/pRolocGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pRolocGUI
Bioc Package Browser	https://code.bioconductor.org/browse/pRolocGUI/
Package Short Url	https://bioconductor.org/packages/pRolocGUI/
Package Downloads Report	Download Stats