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psygenet2r

This is the development version of psygenet2r; for the stable release version, see psygenet2r.

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders


Bioconductor version: Development (3.19)

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]

Maintainer: Alba Gutierrez-Sacristan <a.gutierrez.sacristan at gmail.com>

Citation (from within R, enter citation("psygenet2r")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("psygenet2r")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("psygenet2r")
psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders HTML R Script
psygenet2r: Case study on GWAS on bipolar disorder HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, Genetics, Infrastructure, Software
Version 1.35.1
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, Biobase, labeling, GO.db
System Requirements
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Suggests testthat, knitr, rmarkdown, BiocStyle
Linking To
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package psygenet2r_1.35.1.tar.gz
Windows Binary psygenet2r_1.35.1.zip
macOS Binary (x86_64) psygenet2r_1.35.1.tgz
macOS Binary (arm64) psygenet2r_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/psygenet2r
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/psygenet2r
Bioc Package Browser https://code.bioconductor.org/browse/psygenet2r/
Package Short Url https://bioconductor.org/packages/psygenet2r/
Package Downloads Report Download Stats