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rDGIdb

This is the development version of rDGIdb; for the stable release version, see rDGIdb.

R Wrapper for DGIdb


Bioconductor version: Development (3.19)

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (https://www.dgidb.org/).

Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel

Maintainer: Lars Bosshard <bosshard at nexus.ethz.ch>

Citation (from within R, enter citation("rDGIdb")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rDGIdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rDGIdb")
Query DGIdb using R PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep
Version 1.29.2
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License MIT + file LICENSE
Depends
Imports jsonlite, httr, methods, graphics
System Requirements
URL
See More
Suggests BiocStyle, knitr, testthat
Linking To
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rDGIdb_1.29.2.tar.gz
Windows Binary rDGIdb_1.29.2.zip
macOS Binary (x86_64) rDGIdb_1.29.2.tgz
macOS Binary (arm64) rDGIdb_1.29.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/rDGIdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rDGIdb
Bioc Package Browser https://code.bioconductor.org/browse/rDGIdb/
Package Short Url https://bioconductor.org/packages/rDGIdb/
Package Downloads Report Download Stats