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randRotation

This is the development version of randRotation; for the stable release version, see randRotation.

Random Rotation Methods for High Dimensional Data with Batch Structure


Bioconductor version: Development (3.19)

A collection of methods for performing random rotations on high-dimensional, normally distributed data (e.g. microarray or RNA-seq data) with batch structure. The random rotation approach allows exact testing of dependent test statistics with linear models following arbitrary batch effect correction methods.

Author: Peter Hettegger [aut, cre]

Maintainer: Peter Hettegger <p.hettegger at gmail.com>

Citation (from within R, enter citation("randRotation")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("randRotation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("randRotation")
Random Rotation Package Introduction PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews BatchEffect, BiomedicalInformatics, DifferentialExpression, GeneExpression, Genetics, MicroRNAArray, Microarray, Normalization, Preprocessing, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.15.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL-3
Depends
Imports methods, graphics, utils, stats, Rdpack (>= 0.7)
System Requirements
URL https://github.com/phettegger/randRotation
Bug Reports https://github.com/phettegger/randRotation/issues
See More
Suggests knitr, BiocParallel, lme4, nlme, rmarkdown, BiocStyle, testthat (>= 2.1.0), limma, sva
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package randRotation_1.15.0.tar.gz
Windows Binary randRotation_1.15.0.zip
macOS Binary (x86_64) randRotation_1.15.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/randRotation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/randRotation
Bioc Package Browser https://code.bioconductor.org/browse/randRotation/
Package Short Url https://bioconductor.org/packages/randRotation/
Package Downloads Report Download Stats