sparseMatrixStats

DOI: 10.18129/B9.bioc.sparseMatrixStats    

This is the development version of sparseMatrixStats; for the stable release version, see sparseMatrixStats.

Summary Statistics for Rows and Columns of Sparse Matrices

Bioconductor version: Development (3.13)

High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("sparseMatrixStats")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sparseMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sparseMatrixStats")

 

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Text   LICENSE

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.3.6
In Bioconductor since BioC 3.11 (R-4.0) (1 year)
License MIT + file LICENSE
Depends MatrixGenerics
Imports Rcpp, Matrix, matrixStats, methods
LinkingTo Rcpp
Suggests testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
SystemRequirements C++14
Enhances
URL https://github.com/const-ae/sparseMatrixStats
BugReports https://github.com/const-ae/sparseMatrixStats/issues
Depends On Me
Imports Me DelayedMatrixStats, GSVA
Suggests Me MatrixGenerics, scPCA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sparseMatrixStats_1.3.6.tar.gz
Windows Binary sparseMatrixStats_1.3.6.zip
macOS 10.13 (High Sierra) sparseMatrixStats_1.3.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/sparseMatrixStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sparseMatrixStats
Package Short Url https://bioconductor.org/packages/sparseMatrixStats/
Package Downloads Report Download Stats

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