tRNAdbImport

This is the development version of tRNAdbImport; for the stable release version, see tRNAdbImport.

Importing from tRNAdb and mitotRNAdb as GRanges objects


Bioconductor version: Development (3.20)

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAdbImport")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tRNAdbImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAdbImport")
tRNAdbImport HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Software, Visualization
Version 1.23.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6), GenomicRanges, Modstrings, Structstrings, tRNA
Imports Biostrings, stringr, httr2, xml2, S4Vectors, methods, IRanges, utils
System Requirements
URL
Bug Reports https://github.com/FelixErnst/tRNAdbImport/issues
See More
Suggests BiocGenerics, knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer
Linking To
Enhances
Depends On Me
Imports Me EpiTxDb
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNAdbImport_1.23.0.tar.gz
Windows Binary tRNAdbImport_1.23.0.zip
macOS Binary (x86_64) tRNAdbImport_1.23.0.tgz
macOS Binary (arm64) tRNAdbImport_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tRNAdbImport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAdbImport
Bioc Package Browser https://code.bioconductor.org/browse/tRNAdbImport/
Package Short Url https://bioconductor.org/packages/tRNAdbImport/
Package Downloads Report Download Stats