wpm

DOI: 10.18129/B9.bioc.wpm    

This is the development version of wpm; for the stable release version, see wpm.

Well Plate Maker

Bioconductor version: Development (3.13)

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Author: Helene Borges [aut, cre], Thomas Burger [aut]

Maintainer: Helene Borges <borges.helene.sophie at gmail.com>

Citation (from within R, enter citation("wpm")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("wpm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wpm")

 

HTML R Script How to use Well Plate Maker
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, ExperimentalDesign, GUI, MassSpectrometry, Proteomics, Software
Version 1.1.8
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License Artistic-2.0
Depends R (>= 4.0.0)
Imports utils, methods, cli, Biobase, SummarizedExperiment, config, golem, shiny, DT, ggplot2, dplyr, rlang, stringr, shinydashboard, shinyWidgets, shinycustomloader, RColorBrewer, logging
LinkingTo
Suggests MSnbase, testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/HelBor/wpm https://bioconductor.org/packages/release/bioc/html/wpm.html
BugReports https://github.com/HelBor/wpm/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package wpm_1.1.8.tar.gz
Windows Binary wpm_1.1.8.zip (32- & 64-bit)
macOS 10.13 (High Sierra) wpm_1.1.8.tgz
Source Repository git clone https://git.bioconductor.org/packages/wpm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/wpm
Package Short Url https://bioconductor.org/packages/wpm/
Package Downloads Report Download Stats

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