Welcome to the new bioconductor.org!

AHLRBaseDbs

This is the development version of AHLRBaseDbs; for the stable release version, see AHLRBaseDbs.

LRBaseDbs for AnnotationHub


Bioconductor version: Development (3.19)

Supplies AnnotationHub with `LRbaseDb` Ligand-Receptor annotation databases for many species. All the SQLite files are generated by our Snakemake workflow [lrbase-workflow](https://github.com/rikenbit/lrbase-workflow). For the details, see the README.md of lrbase-workflow.

Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("AHLRBaseDbs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AHLRBaseDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHLRBaseDbs")
Provide LRBaseDb databases for AnnotationHub HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, AnnotationHub, FunctionalAnnotation, LRBaseDb
Version 1.7.0
License Artistic-2.0
Depends R (>= 4.1.0)
Imports AnnotationHub(>= 2.22.0)
System Requirements
URL
Bug Reports https://github.com/rikenbit/AHLRBaseDbs/issues
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AHLRBaseDbs_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/AHLRBaseDbs/
Package Downloads Report Download Stats