BSgenome.Hsapiens.UCSC.hg38

This is the development version of BSgenome.Hsapiens.UCSC.hg38; for the stable release version, see BSgenome.Hsapiens.UCSC.hg38.

Full genomic sequences for Homo sapiens (UCSC genome hg38)


Bioconductor version: Development (3.20)

Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are stored in DNAString objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg38")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.4.5
License Artistic-2.0
Depends R (>= 4.2.0), GenomeInfoDb(>= 1.34.9), BSgenome(>= 1.66.2)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me BSgenome.Hsapiens.UCSC.hg38.masked
Imports Me branchpointer, cfDNAPro, epiregulon, katdetectr, musicatk, ORFhunteR, primirTSS
Suggests Me BSgenome, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, bsseq, BUSpaRse, ChIPpeakAnno, circRNAprofiler, CNEr, crisprBowtie, crisprBwa, crisprDesign, crisprShiny, crisprViz, DegCre, eisaR, enhancerHomologSearch, EpiCompare, EpiTxDb, GenomicScores, GenVisR, GRaNIE, GUIDEseq, HiCDCPlus, methodical, MethReg, MIRit, Motif2Site, multicrispr, nullranges, periodicDNA, pqsfinder, RAIDS, REMP, scanMiRApp, SCOPE, signeR, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, supersigs, TAPseq, transmogR, Ularcirc, XNAString, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/
Package Downloads Report Download Stats