ENCODExplorerData

This is the development version of ENCODExplorerData; for the stable release version, see ENCODExplorerData.

A compilation of ENCODE metadata

Bioconductor version: Development (3.21)

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant [aut], Eric Fournier [aut, cre], Arnaud Droit [aut]

Maintainer: Eric Fournier <Fournier.Eric.2 at crchudequebec.ulaval.ca>

Citation (from within R, enter citation("ENCODExplorerData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ENCODExplorerData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENCODExplorerData")

Introduction to ENCODExplorerData	HTML
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, AnnotationHub, CustomDBSchema, Homo_sapiens, Mus_musculus
Version	0.99.5
License	Artistic-2.0
Depends	R (>= 3.6)
Imports	tools, jsonlite, RCurl, data.table, methods
System Requirements
URL
Bug Reports	https://github.com/ArnaudDroitLab/ENCODExplorerData/issues

Suggests	AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr
Linking To
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ENCODExplorerData_0.99.5.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/ENCODExplorerData/
Package Downloads Report	Download Stats