GenomicState
This is the development version of GenomicState; for the stable release version, see GenomicState.
Build and access GenomicState objects for use with derfinder tools from sources like Gencode
Bioconductor version: Development (3.20)
This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE.
Author: Leonardo Collado-Torres [aut, cre]
Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>
citation("GenomicState")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GenomicState")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicState")
Introduction to GenomicState | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | AnnotationData, AnnotationHub, Homo_sapiens, TxDb |
Version | 0.99.15 |
License | Artistic-2.0 |
Depends | AnnotationHub |
Imports | GenomicFeatures, GenomeInfoDb, rtracklayer, bumphunter, derfinder(>= 1.21.7), AnnotationDbi, IRanges, org.Hs.eg.db, utils, methods |
System Requirements | |
URL | https://github.com/LieberInstitute/GenomicState |
Bug Reports | https://support.bioconductor.org/t/GenomicState |
See More
Suggests | knitr, rmarkdown, BiocStyle, sessioninfo, testthat (>= 2.1.0), glue, derfinderPlot, AnnotationHubData, RefManageR, GenomicRanges, covr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | recountWorkflow |
Suggests Me | |
Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GenomicState_0.99.15.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Package Short Url | https://bioconductor.org/packages/GenomicState/ |
Package Downloads Report | Download Stats |