TENET.AnnotationHub

This is the development version of TENET.AnnotationHub; to use it, please install the devel version of Bioconductor.

Annotation data for the TENET package


Bioconductor version: Development (3.20)

AnnotationHub package containing datasets for use in the TENET package. Includes GenomicRanges objects representing putative enhancer, promoter, and open chromatin regions. All included datasets are aligned to the hg38 human genome.

Author: Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] , Zexun Wu [aut] , Ethan Nelson-Moore [aut] , Suhn Rhie [aut]

Maintainer: Rhie Lab at the University of Southern California <rhielab at gmail.com>

Citation (from within R, enter citation("TENET.AnnotationHub")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TENET.AnnotationHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENET.AnnotationHub")
Using the TENET.AnnotationHub datasets PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, AnnotationHub, GenomicSequence, Homo_sapiens
Version 0.99.2
License GPL-2
Depends R (>= 4.4)
Imports AnnotationHub, GenomicRanges
System Requirements
URL https://github.com/rhielab/TENET.AnnotationHub
Bug Reports https://github.com/rhielab/TENET.AnnotationHub/issues
See More
Suggests AnnotationHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENET.AnnotationHub_0.99.2.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/TENET.AnnotationHub/
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