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geneplast.data

This is the development version of geneplast.data; for the stable release version, see geneplast.data.

Input data for the geneplast package via AnnotationHub


Bioconductor version: Development (3.19)

The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.

Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]

Maintainer: Leonardo Campos <leofields at gmail.com>

Citation (from within R, enter citation("geneplast.data")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("geneplast.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplast.data")
Supporting data for geneplast evolutionary analyses HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology
Version 0.99.7
License Artistic-2.0
Depends R (>= 4.0)
Imports ape, treeio, tibble, dplyr, readr, purrr, igraph, geneplast, BiocFileCache
System Requirements
URL
See More
Suggests geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me geneplast
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneplast.data_0.99.7.tar.gz
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macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/geneplast.data/
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