geneplast.data
This is the development version of geneplast.data; for the stable release version, see geneplast.data.
Input data for the geneplast package via AnnotationHub
Bioconductor version: Development (3.21)
The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.
Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]
Maintainer: Leonardo Campos <leofields at gmail.com>
citation("geneplast.data")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("geneplast.data")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneplast.data")| Supporting data for geneplast evolutionary analyses | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology |
| Version | 0.99.9 |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | ape, treeio, tibble, tidyr, dplyr, readr, purrr, igraph, geneplast, BiocFileCache |
| System Requirements | |
| URL |
See More
| Suggests | geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | geneplast |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | geneplast.data_0.99.9.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/geneplast.data/ |
| Package Downloads Report | Download Stats |