geneplast.data

DOI: 10.18129/B9.bioc.geneplast.data    

This is the development version of geneplast.data; for the stable release version, see geneplast.data.

Input data for the geneplast package via AnnotationHub

Bioconductor version: Development (3.16)

The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.

Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]

Maintainer: Leonardo Campos <leofields at gmail.com>

Citation (from within R, enter citation("geneplast.data")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("geneplast.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplast.data")

 

HTML R Script Supporting data for geneplast evolutionary analyses
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology
Version 0.99.6
License Artistic-2.0
Depends R (>= 4.0)
Imports
LinkingTo
Suggests geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneplast.data_0.99.6.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/geneplast.data/
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