SingleCellMultiModal

DOI: 10.18129/B9.bioc.SingleCellMultiModal    

This is the development version of SingleCellMultiModal; for the stable release version, see SingleCellMultiModal.

Integrating Multi-modal Single Cell Experiment datasets

Bioconductor version: Development (3.13)

SingleCellMultiModal is an ExperimentHub package that serves multiple datasets obtained from GEO and other sources and represents them as MultiAssayExperiment objects. The current focus is on datasets that use new technologies such as scNMT and scM&T.

Author: Marcel Ramos <marcel.ramos at roswellpark.org>, Ricard Argelaguet <ricard at ebi.ac.uk>, Dario Righelli <dario.righelli at gmail.com>, Kelly Eckenrode <kelly.eckenrode at sph.cuny.edu>, Levi Waldron <lwaldron.research at gmail.com>

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("SingleCellMultiModal")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SingleCellMultiModal")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, ExperimentHub, GEO, ReproducibleResearch, SingleCellData
Version 1.3.13
License Artistic-2.0
Depends R (>= 4.0.0), MultiAssayExperiment
Imports AnnotationHub, BiocFileCache, BiocGenerics, ExperimentHub, HCAMatrixBrowser, HDF5Array, S4Vectors, SingleCellExperiment, SpatialExperiment, SummarizedExperiment, Matrix, methods, utils
LinkingTo
Suggests knitr, scran
SystemRequirements
Enhances
URL
BugReports https://github.com/waldronlab/SingleCellMultiModal/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/SingleCellMultiModal
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SingleCellMultiModal
Package Short Url https://bioconductor.org/packages/SingleCellMultiModal/
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