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VariantToolsData

This is the development version of VariantToolsData; for the stable release version, see VariantToolsData.

Data for the VariantTools tutorial


Bioconductor version: Development (3.20)

Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("VariantToolsData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("VariantToolsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VariantToolsData")
VariantTools Example Data PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, HapMap, SNPData, SequencingData
Version 1.29.0
License Artistic-2.0
Depends R (>= 3.5.0), VariantAnnotation(>= 1.7.35)
Imports BiocGenerics, GenomicRanges
System Requirements
URL
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Suggests VariantTools(>= 1.3.4), gmapR(>= 1.3.3), BiocStyle
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package VariantToolsData_1.29.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/VariantToolsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/VariantToolsData
Package Short Url https://bioconductor.org/packages/VariantToolsData/
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