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VectraPolarisData

This is the development version of VectraPolarisData; for the stable release version, see VectraPolarisData.

Vectra Polaris and Vectra 3 multiplex single-cell imaging data


Bioconductor version: Development (3.20)

Provides two multiplex imaging datasets collected on Vectra instruments at the University of Colorado Anschutz Medical Campus. Data are provided as a Spatial Experiment objects. Data is provided in tabular form and has been segmented and phenotyped using Inform software. Raw .tiff files are not included.

Author: Wrobel Julia [aut, cre] , Tusharkanti Ghosh [aut]

Maintainer: Wrobel Julia <julia.wrobel at cuanschutz.edu>

Citation (from within R, enter citation("VectraPolarisData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("VectraPolarisData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VectraPolarisData")
VectraPolarisData HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, ReproducibleResearch, SingleCellData, SpatialData
Version 1.9.0
License Artistic-2.0
Depends ExperimentHub, SpatialExperiment, utils
Imports
System Requirements
URL https://github.com/julia-wrobel/VectraPolarisData
Bug Reports https://support.bioconductor.org/t/VectraPolarisData
See More
Suggests BiocStyle, knitr, rmarkdown, dplyr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package VectraPolarisData_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/VectraPolarisData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/VectraPolarisData
Package Short Url https://bioconductor.org/packages/VectraPolarisData/
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