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This is the development version of fourDNData; for the stable release version, see fourDNData.

4DN data package

Bioconductor version: Development (3.19)

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("fourDNData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

fourDNData HTML R Script
Reference Manual PDF


biocViews ExperimentData, SequencingData
Version 1.3.0
License MIT + file LICENSE
Depends R (>= 4.2)
Imports BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools
System Requirements
URL https://github.com/js2264/fourDNData
Bug Reports https://github.com/js2264/fourDNData/issues
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Suggests rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fourDNData_1.3.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/fourDNData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fourDNData
Package Short Url https://bioconductor.org/packages/fourDNData/
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