macrophage
This is the development version of macrophage; for the stable release version, see macrophage.
Human macrophage immune response
Bioconductor version: Development (3.20)
This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("macrophage")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("macrophage")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("macrophage")
Salmon quantifications for human macrophage immune response experiment | HTML | R Script |
Reference Manual |
Details
biocViews | ExperimentData, RNASeqData, SequencingData |
Version | 1.21.0 |
License | GPL (>= 2) |
Depends | R (>= 3.5.0) |
Imports | |
System Requirements | |
URL |
See More
Suggests | knitr, markdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | fishpond, GeDi, GeneTonic, mosdef, quantiseqr, fluentGenomics |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | macrophage_1.21.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/macrophage |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/macrophage |
Package Short Url | https://bioconductor.org/packages/macrophage/ |
Package Downloads Report | Download Stats |