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ARRmNormalization

Adaptive Robust Regression normalization for Illumina methylation data


Bioconductor version: Release (3.18)

Perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.

Author: Jean-Philippe Fortin, Celia M.T. Greenwood, Aurelie Labbe.

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("ARRmNormalization")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ARRmNormalization")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ARRmNormalization")
ARRmNormalization PDF R Script
Reference Manual PDF

Details

biocViews DNAMethylation, Microarray, Preprocessing, Software, TwoChannel
Version 1.42.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Artistic-2.0
Depends R (>= 2.15.1), ARRmData
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ARRmNormalization_1.42.0.tar.gz
Windows Binary ARRmNormalization_1.42.0.zip
macOS Binary (x86_64) ARRmNormalization_1.42.0.tgz
macOS Binary (arm64) ARRmNormalization_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ARRmNormalization
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ARRmNormalization
Bioc Package Browser https://code.bioconductor.org/browse/ARRmNormalization/
Package Short Url https://bioconductor.org/packages/ARRmNormalization/
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